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1

Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules

Kim, Deok-Soo, Cho, Youngsong, Ryu, Joonghyun, Kim, Jae-Kwan, Kim, Donguk

Journal:

Computer-Aided Design

Year:

2013

Language:

english

File:

PDF, 2.51 MB

english, 2013

2

Euclidean Voronoi diagram of 3D balls and its computation via tracing edges

Deok-Soo Kim, Youngsong Cho, Donguk Kim

Journal:

Computer-Aided Design

Year:

2005

Language:

english

File:

PDF, 436 KB

english, 2005

3

Recognition of docking sites on a protein using β-shape based on Voronoi diagram of atoms

Deok-Soo Kim, Cheol-Hyung Cho, Donguk Kim, Youngsong Cho

Journal:

Computer-Aided Design

Year:

2006

Language:

english

File:

PDF, 950 KB

english, 2006

4

Quasi-triangulation and interworld data structure in three dimensions

Deok-Soo Kim, Donguk Kim, Youngsong Cho, Kokichi Sugihara

Journal:

Computer-Aided Design

Year:

2006

Language:

english

File:

PDF, 432 KB

english, 2006

5

Interaction interfaces in proteins via the Voronoi diagram of atoms

Chong-Min Kim, Chung-In Won, Youngsong Cho, Donguk Kim, Sunghoon Lee, Jonghwa Bhak, Deok-Soo Kim

Journal:

Computer-Aided Design

Year:

2006

Language:

english

File:

PDF, 1.61 MB

english, 2006

6

Triangulation of molecular surfaces

Joonghyun Ryu, Youngsong Cho, Deok-Soo Kim

Journal:

Computer-Aided Design

Year:

2009

Language:

english

File:

PDF, 9.36 MB

english, 2009

7

Manifoldization of -shapes in time

Deok-Soo Kim, Changhee Lee, Youngsong Cho, Donguk Kim

Journal:

Computer-Aided Design

Year:

2010

Language:

english

File:

PDF, 6.09 MB

english, 2010

8

Topologies of surfaces on molecules and their computation in time

Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Chong-Min Kim

Journal:

Computer-Aided Design

Year:

2010

Language:

english

File:

PDF, 2.45 MB

english, 2010

9

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation

Deok-Soo Kim, Youngsong Cho, Kokichi Sugihara, Joonghyun Ryu, Donguk Kim

Journal:

Computer-Aided Design

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

10

Quasi-worlds and quasi-operators on quasi-triangulations

Deok-Soo Kim, Youngsong Cho, Kokichi Sugihara

Journal:

Computer-Aided Design

Year:

2010

Language:

english

File:

PDF, 1010 KB

english, 2010

11

QTF: Quasi-triangulation file format

Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu

Journal:

Computer-Aided Design

Year:

2012

Language:

english

File:

PDF, 1.34 MB

english, 2012

12

Querying simplexes in quasi-triangulation

Deok-Soo Kim, Jae-Kwan Kim, Youngsong Cho, Chong-Min Kim

Journal:

Computer-Aided Design

Year:

2012

Language:

english

File:

PDF, 2.14 MB

english, 2012

13

BetaVoid: Molecular voids via beta-complexes and Voronoi diagrams

Kim, Jae-Kwan, Cho, Youngsong, Laskowski, Roman A, Ryu, Seong Eon, Sugihara, Kokichi, Kim, Deok-Soo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

14

Computation of Molecular Surface Using Euclidean Voronoi Diagram

Joonghyun, Ryu, Donguk, Kim, Youngsong, Cho, Rhohun, Park, Deok-Soo, Kim

Journal:

Computer-Aided Design and Applications

Year:

2005

Language:

english

File:

PDF, 1.34 MB

english, 2005

15

Support-free hollowing for 3D printing via Voronoi diagram of ellipses

Lee, Mokwon, Fang, Qing, Cho, Youngsong, Ryu, Joonghyun, Liu, Ligang, Kim, Deok-Soo

Journal:

Computer-Aided Design

Year:

2018

Language:

english

File:

PDF, 6.84 MB

english, 2018

16

MGOS: A library for molecular geometry and its operating system

Kim, Deok-Soo, Ryu, Joonghyun, Cho, Youngsong, Lee, Mokwon, Cha, Jehyun, Song, Chanyoung, Kim, Sang Wha, Laskowski, Roman A., Sugihara, Kokichi, Bhak, Jong, Ryu, Seong Eon

Journal:

Computer Physics Communications

Year:

2020

File:

PDF, 4.79 MB

2020

17

Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets

Deok-Soo Kim, Joonghyun Ryu, Hayong Shin, Youngsong Cho

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 709 KB

english, 2012

18

Normal vector compression of 3D mesh model based on clustering and relative indexing

Deok-Soo Kim, Youngsong Cho, Hyun Kim

Journal:

Future Generation Computer Systems

Year:

2004

Language:

english

File:

PDF, 224 KB

english, 2004

19

Pocket extraction on proteins via the Voronoi diagram of spheres

Donguk Kim, Cheol-Hyung Cho, Youngsong Cho, Joonghyun Ryu, Jonghwa Bhak, Deok-Soo Kim

Journal:

Journal of Molecular Graphics and Modelling

Year:

2008

Language:

english

File:

PDF, 2.97 MB

english, 2008

20

Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis

Deok-Soo Kim, Youngsong Cho, Donguk Kim, Sangsoo Kim, Jonghwa Bhak, Sung-Hoon Lee

Journal:

Japan Journal of Industrial and Applied Mathematics

Year:

2005

Language:

english

File:

PDF, 3.59 MB

english, 2005

21

Innovative Platform for Transmission Localized Surface Plasmon Transducers and Its Application in Detecting Heavy Metal Pd(II)

Gao, Shuyan, Koshizaki, Naoto, Koyama, Emiko, Tokuhisa, Hideo, Sasaki, Takeshi, Kim, Jae-Kwan, Cho, Youngsong, Kim, Deok-Soo, Shimizu, Yoshiki

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 4.30 MB

english, 2009

22

[IEEE 2011 Eighth International Symposium on Voronoi Diagrams in Science and Engineering (ISVD) - Qing Dao, China (2011.06.28-2011.06.30)] 2011 Eighth International Symposium on Voronoi Diagrams in Science and Engineering - BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram

Cho, Youngsong, Kim, Jae-Kwan, Won, Chung-In, Ryu, Joonghyun, Kim, Chong-Min, Kim, Deok-Soo

Year:

2011

Language:

english

File:

PDF, 882 KB

english, 2011

23

[IEEE Comput. Soc Fifth International Conference on Information Visualisation - London, UK (25-27 July 2001)] Proceedings Fifth International Conference on Information Visualisation - Geometry compression based on mantissa chunking of vertices

Deok-Soo Kim,, Jaeyeol Chung,, Youngsong Cho,, Taeboom Jang,, Hyun Kim,

Year:

2001

Language:

english

File:

PDF, 559 KB

english, 2001

24

[IEEE Comput. Soc 10th Pacific Conference on Computer Graphics and Applications - Beijing, China (9-11 Oct. 2002)] 10th Pacific Conference on Computer Graphics and Applications, 2002. Proceedings. - Normal compression based on clustering and relative indexing

Deok-Soo Kim,, Youngsong Cho,, Hyun Kim,

Year:

2002

Language:

english

File:

PDF, 220 KB

english, 2002

25

[IEEE 4th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2007) - Glamorgan, UK (2007.07.9-2007.07.11)] 4th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2007) - \beta-shape Based Computation of Blending Surfaces on a Molecule

Ryu, Joonghyun, Park, Rhohun, Cho, Youngsong, Seo, Jeongyeon, Kim, Deok-Soo

Year:

2007

Language:

english

File:

PDF, 411 KB

english, 2007

26

[IEEE 2013 10th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD) - St Petersburg, Russia (2013.07.8-2013.07.10)] 2013 10th International Symposium on Voronoi Diagrams in Science and Engineering - Anomaly Occurrences in Quasi-triangulations and Beta-complexes

Kim, Donguk, Cho, Youngsong, Kim, Deok-Soo

Year:

2013

Language:

english

File:

PDF, 5.97 MB

english, 2013

27

BetaDock: Shape-Priority Docking Method Based on Beta-Complex

Kim, Deok-Soo, Kim, Chong-Min, Won, Chung-In, Kim, Jae-Kwan, Ryu, Joonghyun, Cho, Youngsong, Lee, Changhee, Bhak, Jong

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 4.08 MB

english, 2011

28

Voronoi diagrams, quasi-triangulations, and beta-complexes for disks in R2: the theory and implementation in BetaConcept

Kim, Jae-Kwan, Cho, Youngsong, Kim, Donguk, Kim, Deok-Soo

Journal:

Journal of Computational Design and Engineering

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

29

[ACM Press the 2007 ACM symposium - Beijing, China (2007.06.04-2007.06.06)] Proceedings of the 2007 ACM symposium on Solid and physical modeling - SPM '07 - An efficient algorithm for three-dimensional β-complex and β-shape via a quasi-triangulation

Seo, Jeongyeon, Cho, Youngsong, Kim, Donguk, Kim, Deok-Soo

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

30

BetaCavityWeb: a webserver for molecular voids and channels

Kim, Jae-Kwan, Cho, Youngsong, Lee, Mokwon, Laskowski, Roman A., Ryu, Seong Eon, Sugihara, Kokichi, Kim, Deok-Soo

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.47 MB

english, 2015

31

[IEEE 2014 International Conference on Cyberworlds (CW) - Santander, Cantabria, Spain (2014.10.6-2014.10.8)] 2014 International Conference on Cyberworlds - Molecular Geometry and BULL!

Cho, Youngsong, Kim, Jae-Kwan, Ryu, Joonghyun, Lee, Mokwon, Cha, Jehyun, Song, Chanyoung, Kim, Deok-Soo

Year:

2014

Language:

english

File:

PDF, 771 KB

english, 2014

32

Upper and lower bounds of op-code probabilities for Edgebreaker

Cho, Cheol Hyung, Kim, Deok Soo, Cho, Youngsong, Ryu, Joonghyun

Journal:

International Journal of Computational Science and Engineering

Year:

2007

Language:

english

File:

PDF, 202 KB

english, 2007

33

BetaMol: A Molecular Modeling, Analysis and Visualization Software Based on the Beta-Complex and the Quasi-Triangulation

CHO, Youngsong, KIM, Jae-Kwan, RYU, Joonghyun, WON, Chung-In, KIM, Chong-Min, KIM, Donguk, KIM, Deok-Soo

Journal:

Journal of Advanced Mechanical Design Systems and Manufacturing

Year:

2012

Language:

english

File:

PDF, 4.20 MB

english, 2012

34

Beta-complex vs. Alpha-complex: Similarities and Dissimilarities

Kim, Donguk, Lee, Mokwon, Cho, Youngsong, Kim, Deok-Soo

Journal:

IEEE Transactions on Visualization and Computer Graphics

Year:

2018

Language:

english

File:

PDF, 11.23 MB

english, 2018

35

Structural mechanism of glass forming ability in Zr-based binary alloys

Li, Ming-fei, Song, Chanyoung, Wang, Yi-fu, Cho, Youngsong, Zeng, Qiaoshi, Kim, Jaeyong, Malomo, Babafemi, Yang, Liang, Kim, Deok-Soo

Journal:

Year:

2020

File:

PDF, 5.61 MB

2020

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